PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007543-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 125aa    MW: 12888.2 Da    PI: 7.9142
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007543-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-1761106147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c++rw + 
    NNU_007543-RA  61 KGPWSPEEDAILSRLVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 106
                      79******************************.***********985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.6456111IPR017930Myb domain
SMARTSM007173.2E-1560109IPR001005SANT/Myb domain
PfamPF002495.9E-1761106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2362117IPR009057Homeodomain-like
SuperFamilySSF466896.76E-1862117IPR009057Homeodomain-like
CDDcd001675.42E-1663105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MEEEIVVAGD VCTGGDGAGS DSGAVGSGGD DAERGSGIGV VVGDGSGSSS RVGRGSEDRV  60
KGPWSPEEDA ILSRLVSKFG ARNWSLIARG IAGRSGKSCR LRWCNQLDPS VKRKPFTGSV  120
NCFQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-1855117163B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256736.12e-74PREDICTED: uncharacterized protein LOC104597048 isoform X1
TrEMBLK4CRK45e-39K4CRK4_SOLLC; Uncharacterized protein
STRINGSolyc09g011780.2.11e-38(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-28myb domain protein 109